PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3984s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 241aa    MW: 26820.9 Da    PI: 6.5212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3984s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.3e-16111160355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr ++ +g ++AeIrd + ng   r++lg+f+t e Aa a+++a+++l g
  SapurV1A.3984s0010.1.p 111 YRGVRNRP-WGTYAAEIRDSTRNG--VRVWLGTFDTGEAAALAYDQAALSLQG 160
                             9****777.**********44465..***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-28110169IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-20110170IPR016177DNA-binding domain
PROSITE profilePS5103222.194110168IPR001471AP2/ERF domain
SMARTSM003809.3E-33110174IPR001471AP2/ERF domain
PfamPF008476.1E-11111160IPR001471AP2/ERF domain
PRINTSPR003673.8E-9111122IPR001471AP2/ERF domain
CDDcd000187.94E-17111169No hitNo description
PRINTSPR003673.8E-9134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDHSLFNNPN QEFSTYSPFG FLDPSWDELP LDLHDFSPIN SDDSEESHHQ ETLPPDVPFS  60
EAKAYTHSIT SEVPPNIARN NSPQLGSSKE IKEQVATPRA EEENPTRKKT YRGVRNRPWG  120
TYAAEIRDST RNGVRVWLGT FDTGEAAALA YDQAALSLQG SKAVLNFPVE QVRKSLGELK  180
CGFTDRCSPA EALKKTHSKR KPVSSKRKRK GLATKEVLVF EDLGAEYLEK LLSSCERGIP  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-25109170465ATERF1
3gcc_A5e-25109170465ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028796.11e-137PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC82e-50ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLB9GS191e-137B9GS19_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04010.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1713338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-38ethylene response factor 1